plot.positions.simple:
function to plot hits for each PWM on the individual sequence
Description
plot.positions plots hits for each PWM on the individual sequence. Which
sequences to plot can be specified by providing a list of sequence
identifiers seq.ids. Which PWMs to plot can be specified as list of
PWMs. The total height of the plot can be adjusted via argument height.
Usage
"plot.positions.simple"(x, seq.ids, pwms, main)
Arguments
x
an object of the class "cobindr", which will hold all necessary
information about the sequences and the hits.
seq.ids
list of sequence identifiers, for which the positions of TFBS will
be plotted.
pwms
list of PWMs, for which the positions will be visualized. If no list
is given, all PWMs in runObj are used.
main
title for the plot, if no title is given than 'predicted TFBS
positions per sequence' will be used