predicted2pwm

predicted2pwm-method

predicted2pwm,cobindr-method


    object of class "cobindr" describing the sequences and the
  predicted TFBS.


logical flag, to indicate whether the function should
  return a PFM (TRUE) or a PWM (FALSE)

as.pfm


function converts for each input PWM the predicted TFBS hits into a PWM. Function is intended to be used together with the sequence logo creation function 'plot.tfbslogo'.


 methods 

 manip 

Finding and analysing co-occuring motifs of transcription
factor binding sites in groups of genes

Manuela Benary

cobindR

Finding Co-occuring motifs of transcription factor binding sites

predicted2pwm function

object of class "cobindr" describing the sequences and the
  predicted TFBS.

function converts for each input PWM the predicted TFBS hits into a PWM. Function is intended to be used together with the sequence logo creation function 'plot.tfbslogo'.

function to convert predicted TFBS hits into a PWM

positional frequency matrix based on consensus matrix

predicted2pwm: function to convert predicted TFBS hits into a PWM

Description

Usage

Arguments

Value

See Also