coda v0.10-1
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Output analysis and diagnostics for MCMC
Output analysis and diagnostics for Markov Chain Monte
Carlo simulations.
Functions in coda
| Name | Description | |
| spectrum0.ar | Estimate spectral density at zero | |
| codamenu | Main menu driver for the coda package | |
| read.and.check | Read data interactively and check that it satisfies conditions | |
| line | Simple linear regression example | |
| read.coda.interactive | Read CODA output files interactively | |
| spectrum0 | Estimate spectral density at zero | |
| Cramer | The Cramer-von Mises Distribution | |
| coda.options | Options settings for the codamenu driver | |
| crosscorr | Cross correlations for MCMC output | |
| rejectionRate | Rejection Rate for Metropolis--Hastings chains | |
| cumuplot | Cumulative quantile plot | |
| varnames | Named dimensions of MCMC objects | |
| heidel.diag | Heidelberger and Welch's convergence diagnostic | |
| geweke.diag | Geweke's convergence diagnostic | |
| effectiveSize | Effective sample size for estimating the mean | |
| thin | Thinning interval | |
| autocorr.diag | Autocorrelation function for Markov chains | |
| mcpar | Mcpar attribute of MCMC objects | |
| mcmc | Markov Chain Monte Carlo Objects | |
| gelman.diag | Gelman and Rubin's convergence diagnostic | |
| multi.menu | Choose multiple options from a menu | |
| nchain | Dimensions of MCMC objects | |
| crosscorr.plot | Plot image of correlation matrix | |
| summary.mcmc | Summary statistics for Markov Chain Monte Carlo chains | |
| bugs2jags | Convert WinBUGS data file to JAGS data file | |
| gelman.plot | Gelman-Rubin-Brooks plot | |
| raftery.diag | Raftery and Lewis's diagnostic | |
| time.mcmc | Time attributes for mcmc objects | |
| plot.mcmc | Summary plots of mcmc objects | |
| window.mcmc | Time windows for mcmc objects | |
| trellisplots | Trellis plots for mcmc objects | |
| mcmcUpgrade | Upgrade mcmc objects in obsolete format | |
| autocorr.plot | Plot autocorrelations for Markov Chains | |
| autocorr | Autocorrelation function for Markov chains | |
| HPDinterval | Highest Posterior Density intervals | |
| mcmc.list | Replicated Markov Chain Monte Carlo Objects | |
| mcmc.subset | Extract or replace parts of MCMC objects | |
| read.openbugs | Read CODA output files produced by OpenBUGS | |
| geweke.plot | Geweke-Brooks plot | |
| batchSE | Batch Standard Error | |
| read.coda | Read output files in CODA format | |
| mcmc.convert | Conversions of MCMC objects | |
| as.ts.mcmc | Coerce mcmc object to time series | |
| densplot | Probability density function estimate from MCMC output | |
| traceplot | Trace plot of MCMC output | |
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Details
| Date | 2005-11-07 |
| License | GPL Version 2 or later. |
| Packaged | Mon Nov 7 13:24:29 2005; deepayan |
| depends | base (>= 2.2.0) , lattice , R (>= 2.2.0) |
| Contributors | Karen Vines, Martyn Plummer, Kate Cowles, Nicky Best |
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