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copa (version 1.40.0)
Functions to perform cancer outlier profile analysis.
Description
COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.
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Version
Version
1.40.0
1.38.0
1.36.0
1.34.0
Version
1.40.0
License
Artistic-2.0
Maintainer
James W MacDonald
Last Published
February 15th, 2017
Functions in copa (1.40.0)
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scatterPlotCopa
Create scatterplots of interesting gene pairs
copa-package
copa - A package to compute 'Cancer Outlier Profile Analysis'
getans
Interactive Function
tableCopa
Summarize copa results
copa
Calculate COPA Scores from a Set of Microarrays
copaPerm
Measure Significance of COPA by Permutation
perm.mat
Produce a Matrix of Permuted Classlabels
summaryCopa
Create Summary Showing Top Gene Pairs
copaFilter
Pre-filter Genes for COPA Analysis
pSum
Compute all pairwise sums
plotCopa
Plot Gene Pairs fom the Results of Running copa