copa-package:
copa - A package to compute 'Cancer Outlier Profile Analysis'
Description
This package is used to compute copa scores, p-values based on
permutation, and plots of paired genes.
Details
|
Package: |
| copa |
|
Type: |
| Package |
|
Version: |
| 1.1.2 |
|
Date: |
| 2006-01-26 |
|
License: |
| Artistic |
There are two main functions; copa, which is used to compute the COPA
score for a set of microarrays, and permCopa, which is used to
calculate permutation based p-values and estimate false discovery rate (FDR).
References
Tomlins, SA, et al. Recurrent fusion of TMPRSS2 and ETS transcription
factor genes in prostate cancer.
Science. 2005 Oct 28;310(5748):644-8.