copy_detect

Separates two or more gene copies from a single subset of short reads.

Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.

Lei Yang

copyseparator

Assembling Long Gene Copies from Short Read Data

copy_detect function

<dl><dt>filename</dt>
<dd>A fasta file contains short reads from a single subset generated by "subset_downsize".</dd>
<dt>copy_number</dt>
<dd>An integer (e.g. 2,3, or 4) giving the anticipated number of gene copies in the input file.</dd>
<dt>verbose</dt>
<dd>Turn on (verbose=1; default) or turn off (verbose=0) the output.</dd></dl>

Arguments

copy_detect — copy_detect

<dl>

<dt>filename</dt>
<dd>A fasta file contains short reads from a single subset generated by "subset_downsize".</dd>


<dt>copy_number</dt>
<dd>An integer (e.g. 2,3, or 4) giving the anticipated number of gene copies in the input file.</dd>


<dt>verbose</dt>
<dd>Turn on (verbose=1; default) or turn off (verbose=0) the output.</dd>

</dl>

copy_detect: copy_detect

Description

Usage

Value

Arguments

Examples