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corrDNA (version 1.0.1)

Finding Associations in Position-Wise Aligned DNA Sequence Dataset

Description

Can be useful for finding associations among different positions in a position-wise aligned sequence dataset. The approach adopted for finding associations among positions is based on the latent multivariate normal distribution.

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Version

Install

install.packages('corrDNA')

Monthly Downloads

198

Version

1.0.1

License

GPL (>= 2)

Maintainer

Prabina Meher

Last Published

April 5th, 2018

Functions in corrDNA (1.0.1)

assoc_Zi.ZjY

Association between variable \(Z_{i}\) and \(Z_{jY}\).
assoc_ZiR.ZjR

Association between variable \(Z_{iR}\) and \(Z_{jR}\).
assoc_ZiR.ZjY

Association between variable \(Z_{iR}\) and \(Z_{jY}\).
assoc_ZiY.ZjY

Association between variable \(Z_{iY}\) and \(Z_{jY}\).
assoc_Zi.Zj

Association between variable \(Z_{i}\) and \(Z_{j}\).
assoc_Zi.ZjR

Association between variable \(Z_{i}\) and \(Z_{jR}\).
assoc_comb

Complete association matrix.
don_dat

A sample dataset of human donor splice sites.