corrDNA (version 1.0.1)

assoc_Zi.ZjR: Association between variable $Z_i$ and $Z_{jR}$.

Description

Finding association between variable Z at $i^{th}$ position and $Z_R$ at $j^{th}$ position. Here, the standard normal variable Z represents the occurence of R=(A,G) and Y=(C, T) at each position in the position wise aligned dataset, whereas the the standard normal variable $Z_R$ reprsents the occurences of nucleotides A and G at any position based on some threshold value.

Usage

assoc_Zi.ZjR(x, rZiZj)

Arguments

x

A dataframe of position wise aligned sequence dataset having A, T, G and C only.

rZiZj

An object generated by using the function assoc_Zi.Zj.

Value

A numeric matrix of order L by L for the dataset of L nucleotides long sequences.

Details

The user has to supply the input dataset as well as the output generated from the function assoc_Zi.Zj.

Examples

# NOT RUN {
data(don_dat)
kk <- don_dat[1:300,]
zizj <- assoc_Zi.Zj(x=kk)
zizjr <- assoc_Zi.ZjR(x=kk, rZiZj=zizj)
zizjr
# }