cosmiq (version 1.6.0)

quantify_combined: Generate report with combined ion intensities

Description

quantify_combined calculates a data table of mz intensities from a sum of ions within a selected mz window and from all MS scans.

Usage

quantify_combined(xs,xy, rtcombine)

Arguments

xs

xcmsSet object

xy

table including mz location parameters

rtcombine

Numerical, with two entries. If no retention time information is to be used, rtcombine provides the retention time window where ion intensities will be summed for quantification. If rtcombine = c(0,0), All scans will be used

Details

This function is only used, when no retention time information should be used, for example with direct infusion experiments.

Examples

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#     #  see package vignette
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