Description
Plots the # of genes called significnat at a given false
disocvery rate for the SAM (heterogenous tissue)
comparison, and for each of the contrasted cell-types
using csSAM
Usage
plotCsSAM(csSAMdata, SAMdata, alternative, cellID, numcell, fileName)
Arguments
csSAMdata
List object output of the fdrCsSAM
function
SAMdata
List object output of the fdrSAM function
alternative
Type of test conducted. Will appear in
plot title.
cellID
Label for each cell-type
numcell
Number of different cell-types being
considered.
fileName
Name of output pdf file.
References
Shen-Orr SS, Tibshirani R, Khatri P, Bodian DL, Staedtler
F, Perry NM, Hastie T, Sarwal MM, Davis MM and Butte AJ
(2010). "Cell type-specific gene expression differences
in complex tissues." _Nature methods_, *7*(4), pp. 287-9.
ISSN 1548-7105, , .