dagPeptides-class


  An object of class <code>"dagPeptides"</code> represents the information of peptides.


classes

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

Jianhong Ou

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dagPeptides-class function

Objects can be created by calls of the form 
  <code>new("dagPeptides", data, peptides, upstreamOffset, downstreamOffset, type)</code>.

Objects from the Class

<dl>
    <dt><code>data</code></dt><dd>Object of class <code>"data.frame"</code> The details of the input sequences. 
    It includes the columns: IDs, anchorAA (anchor Amino Acid), anchorPos (anchor Position),
    peptide (protein peptide), anchor, upstream, downstream (peptides in given upstream and downstream offset from anchor)</dd> <dt><code>peptides</code></dt><dd>code"matrix" The input peptides. Each column contains one peptide in that position</dd> <dt><code>upstreamOffset</code></dt><dd><code>"numeric"</code> The upstream offset from anchor</dd> <dt><code>downstreamOffset</code></dt><dd><code>"numeric"</code> The downstream offset from anchor</dd> <dt><code>type</code></dt><dd><code>"charactger"</code> ID type of inputs</dd> </dl> 

Slots

An object of class <code>"dagPeptides"</code> represents the information of peptides.

dagPeptides-class: Class `"dagPeptides"`

Description

Arguments

Objects from the Class

Slots