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dagLogo (version 1.10.2)

dagLogo

Description

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

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Version

Version

1.10.2

License

GPL (>=2)

Maintainer

Jianhong Ou

Last Published

February 15th, 2017

Functions in dagLogo (1.10.2)

seq.example

example object of dagPeptides
dagLogo-package

Visualize significant conserved amino acid sequence pattern in groups based on probability theory
formatSequence

prepare an object of dagPeptides from sequences
Proteome-class

Class "Proteome"
dagLogo

plot sequence logo for test results
proteome.example

the subset proteome of fruit fly
dagHeatmap

plot heatmap for test results
colorsets

retrieve color setting for logo
ecoli.proteome

the subset proteome of Escherichia coli
testDAU

DAU test
fetchSequence

fetch sequence by id
testDAUresults-class

Class "testDAUresults"
buildBackgroundModel

build background model
nameHash

convert group name to a single character
dagBackground-class

Class "dagBackground"
dagPeptides-class

Class "dagPeptides"
prepareProteome

prepare proteome for background building