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ecoli.proteome: the subset proteome of Escherichia coli

Description

the subset proteome of Escherichia coli

Usage

data(ecoli.proteome)

Format

An object of Proteome for Escherichia coli proteome. The format is: A list with one data frame and an character.

proteome

'data.frame': obs. of 4 variables

type

'character': "UniProt"

The format of proteome is

ENTREZ_GENE

a character vector, records entrez gene id

SEQUENCE

a character vector, peptide sequences

ID

a character vector, Uniprot ID

LEN

a character vector, length of peptides

Details

used in the examples Annotation data obtained by: library(UniProt.ws) taxId(UniProt.ws) <- 562 proteome <- prepareProteome(UniProt.ws, species="Escherichia coli")

Examples

data(ecoli.proteome)
head(ecoli.proteome@proteome)
ecoli.proteome@type