testDAUresults-class


  An object of class <code>"testDAUresults"</code> represents background model.


classes

Visualize significant conserved amino acid sequence pattern in groups based on probability theory.

Jianhong Ou

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testDAUresults-class function

Objects can be created by calls of the form 
  <code>new("dagBackground", group="character",
                        difference="matrix",
                        zscore="matrix",
                        pvalue="matrix",
                        background="matrix",
                        motif="matrix",
                        upstream="numeric",
                        downstream="numeric")</code>.

Objects from the Class

<dl>
    <dt><code>group</code></dt><dd>Object of class <code>"character"</code> could be "null", "classic", "charge", "chemistry", "hydrophobicity"</dd> <dt><code>difference</code></dt><dd>code"matrix" the difference of inputs from background for each amino acid in each position</dd> <dt><code>zscore</code></dt><dd>code"matrix" z score for each amino acid in each position</dd> <dt><code>pvalue</code></dt><dd>code"matrix" pvalue for each amino acid in each position</dd> <dt><code>background</code></dt><dd>code"matrix" background frequencies for each amino acid in each position</dd> <dt><code>motif</code></dt><dd>code"matrix" inputs frequencies for each amino acid in each position</dd> <dt><code>upstream</code></dt><dd><code>"numeric"</code> The upstream offset from anchor</dd> <dt><code>downstream</code></dt><dd><code>"numeric"</code> The downstream offset from anchor</dd> </dl> 

Slots

An object of class <code>"testDAUresults"</code> represents background model.

testDAUresults-class: Class `"testDAUresults"`

Description

Arguments

Objects from the Class

Slots