deTS (version 1.0)

query_ENCODE: ENCODE raw query data

Description

An example of RNA-Seq query data from ENCODE data for tissue-specific enrichment analysis

Usage

data("query_ENCODE")

Format

A data frame with average expression level of 18661 genes in 44 ENCODE tissues.

Row is genes symbol and column is sample names.

Adrenal Gland Body of Pancreas Breast Epithelium Camera-type Eye Cerebellum

TSPAN6 11.64 5.390 11.04 24.65 13.238

TNMD 0.01 0.147 2.24 12.43 0.090

DPM1 18.82 9.812 14.21 24.02 10.505

SCYL3 3.81 2.593 5.63 10.50 3.783

C1orf112 1.64 2.308 2.86 14.61 7.345

Details

nothing

References

Pei G., Dai Y., Zhao Z., Jia P. (2019) deTS: Tissue-Specific Enrichment Analysis to decode tissue specificity. Bioinformatics, In submission.

Examples

# NOT RUN {
data(query_ENCODE)
# }