deTS (version 1.0)

Tissue-Specific Enrichment Analysis

Description

Tissue-specific enrichment analysis to assess lists of candidate genes or RNA-Seq expression profiles. Pei G., Dai Y., Zhao Z. Jia P. (2019) deTS: Tissue-Specific Enrichment Analysis to decode tissue specificity. Bioinformatics, In submission.

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Version

Install

install.packages('deTS')

Monthly Downloads

172

Version

1.0

License

GPL (>= 2)

Maintainer

Guangsheng Pei

Last Published

February 22nd, 2019

Functions in deTS (1.0)

GTEx_t_score

GTEx t-score to define tissue-specific genes

tsea.plot

Tissue-specific enrichment analysis result heatmap plot

tsea.expression.normalization

RNA-Seq expression profiles normalization

tsea.expression.decode

Tissue-specific enrichment analysis for RNA-Seq expression profiles

tsea.summary

Tissue-specific enrichment analysis result summary

GWAS_gene_multiple

Gene symbol query data for multiple samples

ENCODE_z_score

ENCODE z-score to define tissue-specific genes

query_ENCODE

ENCODE raw query data

deTS-package

Tissue-Specific Enrichment Analysis deTS

query_GTEx

GTEx raw query data

tsea.analysis.multiple

Tissue-specific enrichment analysis for multi query gene lists

correction_factor

Gene average expression level and standard deviation in GTEx data

tsea.analysis

Tissue-specific enrichment analysis for query gene list

GWAS_gene

Gene symbol query data for single sample