derfinder (version 1.6.4)

derfinder-defunct: Defunct functions in package derfinder

Description

These functions are defunct and no longer available.

Usage

advanced_arg()
analyze_chr()
annotate_regions()
calculate_pvalues()
calculate_stats()
coerce_gr()
collapse_full_coverage()
coverage_to_exon()
create_bw()
create_bw_sample()
extended_map_seqlevels()
filter_data()
find_regions()
full_coverage()
get_region_coverage()
load_coverage()
make_genomic_state()
make_models()
merge_results()
preprocess_coverage()
raw_files()
region_matrix()
sample_depth()

Details

The following functions are defunct; use the replacements indicated below:

• advanced_arg:advancedArg

analyze_chr: analyzeChr annotate_regions: annotateRegions calculate_pvalues: calculatePvalues calculate_stats: calculateStats coerce_gr: coerceGR collapse_full_coverage: collapseFullCoverage coverage_to_exon: coverageToExon create_bw: createBw create_bw_sample: createBwSample extended_map_seqlevels: extendedMapSeqlevels filter_data: filterData find_regions: findRegions full_coverage: fullCoverage get_region_coverage: getRegionCoverage load_coverage: loadCoverage make_genomic_state: makeGenomicState make_models: makeModels merge_results: mergeResults preprocess_coverage: preprocessCoverage raw_files: rawFiles region_matrix: regionMatrix sample_depth: sampleDepth