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destiny (version 2.0.4)
Creates diffusion maps
Description
Create and plot diffusion maps.
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Version
Version
2.0.4
2.0.3
1.2.1
1.0.0
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Install
install.packages('destiny')
Version
2.0.4
License
GPL
Maintainer
Philipp Angerer
Last Published
December 19th, 2014
Functions in destiny (2.0.4)
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coercions
Coercion methods
destiny
Create and plot diffusion maps
DiffusionMap methods
DiffusionMap methods
dm_predict
Predict new data points using an existing DiffusionMap. The resulting matrix can be used in
DiffusionMap accessors
DiffusionMap accession methods
DiffusionMap class
Create a diffusion map of cells
destiny-deprecated
Compatibility versions of functions for destiny 1.x scripts
cube_helix
Sequential color palette using the cube helix system
ExpressionSet helpers
Convert object to
extractions
Extraction methods
find_tips
Find tips in a DiffusionMap object
guo
Guo at al. mouse embryonic stem cell qPCR data
find_dm_k
Find a suitable k
find_sigmas
Calculate the average dimensionality for m different gaussian kernel widths (
DPT
Diffusion Pseudo Time
eig_decomp
Fast eigen decomposition using ARPACK
DPT matrix methods
DPT Matrix methods
DPT methods
DPT methods
destiny generics
destiny generics
colorlegend
Color legend
updateObject-method
Update old
plot.Sigmas
Plot
plot.DiffusionMap
3D or 2D plot of diffusion map
l_which
Logical which
Sigmas class
Sigmas Object
random_root
Find a random root cell index
plot.DPT
Plot DPT