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dhga (version 0.1)

Differential Hub Gene Analysis

Description

Identification of hub genes in a gene co-expression network from gene expression data. The differential network analysis for two contrasting conditions leads to the identification of various types of hubs like Housekeeping, Unique to stress (Disease) and Unique to control (Normal) hub genes.

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Version

Install

install.packages('dhga')

Monthly Downloads

151

Version

0.1

License

GPL (>= 2)

Maintainer

Samarendra Das

Last Published

September 6th, 2016

Functions in dhga (0.1)

HubStatus

Hub status of the genes in a gene co-expression network
rice_normal

The gene expression data of rice under control or normal condition
hub.pval.cutoff

Identification of hub genes in a Gene Co-expression Network based on gene connection significance values
DiffHub

Differential Hub status of the genes in a gene co-expression network
WeightedGeneScore

Computation of weighted gene score of genes in Gene Co-expression Network
Adjacency

Construction of Gene Co-expression Network
pvalue.hub

Compuation of gene connection sigificance values in a Gene Co-expression network
rice_salt

The gene expression data of rice under salinity stress condition
HubPlot

Venn plot of hub genes under two conditions namely stress and control
hub.wgs

Identification of hub genes in a Gene Co-expression Network based on Weighted Gene Score