get_clean_ids

<p>Return the barcodes that pass DIEM filtering. The function 
<code><a rd-options="" href="/link/call_targets?package=diem&version=1.0" data-mini-rdoc="diem::call_targets">call_targets</a></code> must be run beforehand.</p>

Identification of debris-containing droplets
from a droplet-based single cell/nucleus RNA-seq. 'diem' uses
the expression profile of background RNA droplets, followed
by expectation maximization (EM), to assign candidates as
debris or nuclei. See Alvarez M, Rahmani E, et al (2019)
<doi:10.1101/786285> for details.

Marcus Alvarez

diem

Debris-Containing Droplet Identification using EM

Elior Rahmani

get_clean_ids function

<p>Return the barcodes that pass DIEM filtering. The function 
<code><a rd-options='' href='call_targets'>call_targets</a></code> must be run beforehand.</p>

get_clean_ids: Return IDs of clean droplets

Description

Usage

Arguments

Value