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diffee (version 1.1.0)

Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure

Description

This is an R implementation of Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure (DIFFEE). The DIFFEE algorithm can be used to fast estimate the differential network between two related datasets. For instance, it can identify differential gene network from datasets of case and control. By performing data-driven network inference from two high-dimensional data sets, this tool can help users effectively translate two aggregated data blocks into knowledge of the changes among entities between two Gaussian Graphical Model. Please run demo(diffeeDemo) to learn the basic functions provided by this package. For further details, please read the original paper: Beilun Wang, Arshdeep Sekhon, Yanjun Qi (2018) .

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install.packages('diffee')

Monthly Downloads

152

Version

1.1.0

License

GPL-2

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Maintainer

Beilun Wang

Last Published

July 3rd, 2018

Functions in diffee (1.1.0)

plot.diffee

Plot diffee result specified by user input
diffee

Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure
returngraph

return igraph object from diffee result specified by user input
exampleData500

A simulated toy dataset that includes 2 data matrices (from 2 related tasks).
nip_37_data

NIPS word count dataset
exampleData

A simulated toy dataset that includes 2 data matrices (from 2 related tasks).
exampleDataGraph

A simulated toy dataset that includes 3 igraph objects
cancer

Microarray data set for breast cancer
diffee-package

estimating DIFFerential networks via an Elementary Estimator under a high-dimensional situation