diffee (version 1.1.0)

plot.diffee: Plot diffee result specified by user input

Description

This function can plot and return multiple sparse graphs distinguished by edge colors from the result generated by diffee

Usage

# S3 method for diffee
plot(x, graphlabel = NULL, type = "task", index = NULL,
  graphlayout = NULL, ...)

Arguments

x

output generated from diffee function (diffee class)

graphlabel

vertex names for the graph, there are three options: (1) NA (no label) (2) NULL (default numeric label according to the feature order) (3) a vector of labels (a vector of labels cooresponding to x) deault value is NULL

type

type of graph, there are four options: (1) "task" (graph for each task (including shared part) specified further by subID (task number)) (2) "neighbour" (zoom into nodes in the graph specified further by index (node id))

index

determines which node(s) to zoom into when parameter type is "neighbour" could either be an integer or vector of integers representing node ids (zoom into one node or multiple nodes)

graphlayout

layout for the graph (two column matrix specifying x,y coordinates of each node in graph) if not provided, igraph will use the default layout_nicely() function to present the graph

...

extra parameters passed to plot.igraph

Value

a plot of graph / subgraph from diffee result specified by user input

Details

when only the diffee is provided, the function will plot all graphs with default numeric labels User can specify multiple subID and multiple index to zoom in multiple nodes on multiple graphs Each graph will include a descriptive title.

Examples

# NOT RUN {
data(exampleData)
result = diffee(exampleData[[1]], exampleData[[2]], 0.45)
plot.diffee(result)
# }