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dinamic (version 1.0)

DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors

Description

This function implements the DiNAMIC procedure for assessing the statistical significance of recurrent DNA copy number aberrations (Bioinformatics (2011) 27(5) 678 - 685).

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Version

Install

install.packages('dinamic')

Monthly Downloads

197

Version

1.0

License

GPL-2

Maintainer

Vonn Walter

Last Published

October 29th, 2012

Functions in dinamic (1.0)

makeCytoband

Find the Chromosome Arm for Each Marker

annot.file

A Cytoband Annotation Data Frame

wilms.markers

aCGH Marker Data from Natrajan et al. (2006)

wilms.data

DNA Copy Number Data from Natrajan et al. (2006)

detailedLook

Assessing the Significance of Recurrent DNA Copy Number Aberrations

recodeBinary

Recode Binary Vectors

dinamic-package

Assessing the Statistical Significance of Recurrent DNA Copy Number Aberrations

quickLook

Assessing the Significance of Recurrent DNA Copy Number Aberrations

findNull

Find DiNAMIC's Null Distribution

peeling

Apply the Peeling Procedure at a Given Marker