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dotgen (version 0.1.0)

Gene-Set Analysis via Decorrelation by Orthogonal Transformation

Description

Decorrelates a set of summary statistics (i.e., Z-scores or P-values per SNP) via Decorrelation by Orthogonal Transformation (DOT) approach and performs gene-set analyses by combining transformed statistic values; operations are performed with algorithms that rely only on the association summary results and the linkage disequilibrium (LD). For more details on DOT and its power, see Olga (2020) .

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Install

install.packages('dotgen')

Monthly Downloads

655

Version

0.1.0

License

GPL (>= 2)

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Maintainer

Xiaoran Tong

Last Published

November 16th, 2020

Functions in dotgen (0.1.0)

dot

Decorrelation by Orthogonal Transformation (DOT)
dot_sst

Methods for combining decorrelated summary statistics
cst

Correlation among association test statistics
zsc

Calculate Z-scores from P-values and estimated effects
imp

Impute missing genotypes