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dpcR (version 0.1.3.3)

Digital PCR Analysis

Description

Analysis, visualisation and simulation of digital PCR experiments.

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Install

install.packages('dpcR')

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Version

0.1.3.3

License

GPL-3

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Repository

https://github.com/michbur/dpcR

Maintainer

Michal Burdukiewicz

Last Published

February 24th, 2015

Functions in dpcR (0.1.3.3)

show-methods

Methods for Function show

moments-methods

Calculate Moments of Poisson Distribution

compare_dens

Plot and Compare Densities

test_counts_gui

Compare digital PCR runs - interactive presentation

many_peaks

Artificial data set with many peaks

dpcr_density

Calculate Density of Digital PCR

bind_dpcr-methods

Bind dpcr objects

pds

Plasmid dilution series results

pds_raw

Plasmid dilution series raw data

create_dpcr

Create dpcR object

summary-methods

Methods for Function summary

plot_panel

Plot Panel

bioamp

A function to analyze plot the raw data from a BioRad droplet digital PCR experiment

plot_vic_fam

Amplitude Plot VIC and FAM Channels of a Droplet Digital PCR Experiment

qpcr_analyser

qPCR Analyser

extract_dpcr

Extract Digital PCR Experiment

rtadpcr-class

Class "rtadpcr" - real-time array digital PCR experiments

Digital PCR Density Graphical User Interface

sim_adpcr

Simulate Array Digital PCR

Class "adpcr" - end-point array digital PCR experiments

qpcr2pp

qPCR to Poisson Process

plot.qpcrpp

Plot qpcrpp objects

limit_cq

Limit Cy0 values

test_panel

Dispersion Test for Spatial Point Pattern in Array dPCR Based on Quadrat Counts

binarize

Binarize digital PCR data

sim_ddpcr

Simulate Droplet Digital PCR

count_test

Class "count_test"

num2int

Convert numeric to integer