Learn R Programming

Installation

dpcR is available on CRAN, so installation is as simple as:

install.packages("dpcR")

You can install the latest development version of the code using the devtools R package.

# Install devtools, if you haven't already.
install.packages("devtools")

library(devtools)
install_github("michbur/dpcR")

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Version

Install

install.packages('dpcR')

Monthly Downloads

52

Version

0.6

License

GPL-3

Issues

0

Pull Requests

0

Stars

9

Forks

2

Maintainer

Andrej-Nikolai Spiess

Last Published

June 18th, 2025

Functions in dpcR (0.6)

dPCRmethyl

Methylated human gDNA
ddpcRquant

Quantify droplets
count_test

Class "count_test"
df2dpcr

Convert data.frame to dpcr object
plot_vic_fam

Amplitude Plot VIC and FAM Channels of a Droplet Digital PCR Experiment
pds

Plasmid dilution series results
qdpcr-class

Class "qdpcr"
num2int

Convert numeric to integer
qpcr_analyser

qPCR Analyser
moments-methods

Calculate Moments of Poisson Distribution
qpcr2pp

qPCR to Poisson Process
show-methods

Methods for Function show
read_QX200

Read QX200
dpcr_density_gui

Digital PCR Density Graphical User Interface
sim_adpcr

Simulate Array Digital PCR
create_dpcr

Create dpcR object
test_counts

Test counts
dpcr_density_table

Calculate Density of Multiple dPCR runs
many_peaks

Artificial data set with many peaks
plot.qdpcr

Plot qdpcr objects
test_counts_gui

Compare digital PCR runs - interactive presentation
plot_panel

Plot Panel
read_amp

Read digital PCR amplitude raw data
limit_cq

Limit Cy0 values
sim_dpcr

Simulate Droplet Digital PCR
read_BioMark

Read BioMark
read_redf

Read digital PCR raw data
pds_raw

Plasmid dilution series raw data
read_QX100

Read QX100
extract_dpcr

Extract Assays or Experiments
rename_dpcr

Rename object
read_dpcr

Read digital PCR data
summary-methods

Methods for Function summary
extract_run

Extract Digital PCR Run
test_panel

Dispersion Test for Spatial Point Pattern in Array dPCR Based on Quadrat Counts
six_panels

Simulated Digital PCR data
rtadpcr-class

Class "rtadpcr" - real-time array digital PCR experiments
test_peaks

Peak Test
test_pooled

Compare pooled digital PCR
calc_coordinates

Calculate Array Coordinates
White

Digitalized Data from a Fluidigm Array
BioradCNV

Copy number variation experiment
bind_dpcr-methods

Bind dpcr objects
binarize

Binarize digital PCR data
dpcr2df-methods

Convert dpcr object to data frame
adpcr-class

Class "adpcr" - end-point array digital PCR experiments
bioamp

Analyze and plot a Bio-Rad droplet digital PCR experiment
adpcr2ppp

Convert adpcr to ppp
compare_dens

Plot and Compare Densities
adpcr2panel

Convert adpcr object to array
dpcr-class

Class "dpcr" - general digital PCR
dpcr_density

Calculate Density of Single dPCR Run
dpcReport

Digital PCR Report Graphical User Interface
dpcR-package

Digital PCR Analysis