dpcR (version 0.1.4.0)

adpcr-class: Class "adpcr" - end-point array digital PCR experiments

Description

A class specifically designed to contain results from end-point array digital PCR experiments. Data is represented as matrix, where each column describes different experiment. Type of data in all columns is specified in slot "type".

Details

Possible type values of adpcr objects:

1. "ct": cycle threshold of each well,

"fluo": fluorescence of each well, "nm": number of molecules in each well, "np": status (positive (1) or negative(0)) of each well, "tnp": total number of positive wells in the panel (single value per each panel, not per well).

See Also

Ploting and management: bind_dpcr, extract_dpcr, plot_panel.

Tests: test_panel.

Simulation: sim_adpcr.

Real-time array digital PCR: rtadpcr.

Droplet digital PCR: ddpcr.

Examples

rand_array <- sim_adpcr(400, 1600, 100, pos_sums = FALSE, n_panels = 5)
one_rand_array <- extract_dpcr(rand_array, 1)
plot_panel(one_rand_array, 40, 40)