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dpcR (version 0.1.4.0)

Digital PCR Analysis

Description

Analysis, visualisation and simulation of digital PCR experiments.

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Version

Install

install.packages('dpcR')

Monthly Downloads

117

Version

0.1.4.0

License

GPL-3

Issues

0

Pull Requests

0

Stars

9

Forks

2

Maintainer

Michal Burdukiewicz

Last Published

April 9th, 2015

Functions in dpcR (0.1.4.0)

sim_ddpcr

Simulate Droplet Digital PCR
num2int

Convert numeric to integer
adpcr2ppp

Convert adpcr to ppp
dpcR-package

Digital PCR Analysis
moments-methods

Calculate Moments of Poisson Distribution
show-methods

Methods for Function show
rtadpcr-class

Class "rtadpcr" - real-time array digital PCR experiments
dpcr_density

Calculate Density of Digital PCR
bind_dpcr-methods

Bind dpcr objects
pds

Plasmid dilution series results
binarize

Binarize digital PCR data
summary-methods

Methods for Function summary
many_peaks

Artificial data set with many peaks
ddpcr-class

Class "ddpcr"
test_counts_gui

Compare digital PCR runs - interactive presentation
pds_raw

Plasmid dilution series raw data
test_ratio

Rate ratio test
create_dpcr

Create dpcR object
plot_panel

Plot Panel
compare_dens

Plot and Compare Densities
test_counts

Test counts
plot.qpcrpp

Plot qpcrpp objects
adpcr-class

Class "adpcr" - end-point array digital PCR experiments
count_test

Class "count_test"
sim_adpcr

Simulate Array Digital PCR
qpcrpp-class

Class "qpcrpp"
test_peaks

Peak Test
extract_dpcr

Extract Digital PCR Experiment
bioamp

A function to analyze plot the raw data from a BioRad droplet digital PCR experiment
test_panel

Dispersion Test for Spatial Point Pattern in Array dPCR Based on Quadrat Counts
plot_vic_fam

Amplitude Plot VIC and FAM Channels of a Droplet Digital PCR Experiment
limit_cq

Limit Cy0 values
dpcr_density_gui

Digital PCR Density Graphical User Interface
qpcr_analyser

qPCR Analyser
qpcr2pp

qPCR to Poisson Process