adpcr-class

adpcr

A class specifically designed to contain results from end-point array
digital PCR experiments. Data is represented as matrix, where each column
describes different experiment. Type of data in all columns is specified in
slot <code>"type"</code>. Inherits from <code>dpcr</code>.

classes

Analysis, visualisation and simulation of digital polymerase chain
reaction (dPCR) (Burdukiewicz et al. (2016) <doi:10.1016/j.bdq.2016.06.004>).
Supports data formats of commercial systems (Bio-Rad QX100 and
QX200; Fluidigm BioMark) and other systems.

Andrej-Nikolai Spiess

dpcR

Digital PCR Analysis

Michal Burdukiewicz

Stefan Roediger

Bart Jacobs

Piotr Sobczyk

adpcr-class function

<dl>
<dt><code>col_names</code></dt>
<dd><code>"character"</code> vector naming columns in the array.</dd></dl>
<dt><code>row_names</code></dt>
<dd><code>"character"</code> vector naming rows in the array.</dd>
<dt><code>row_id</code></dt>
<dd><code>"integer"</code> vector providing row indices of all runs.</dd>
<dt><code>col_id</code></dt>
<dd><code>"integer"</code> vector providing column indices of all runs.</dd>
<dt><code>panel_id</code></dt>
<dd><code>"factor"</code> naming the panel to which experiment belong.</dd>

Slots

Author

Class "adpcr" - end-point array digital PCR experiments — adpcr-class

<dl>
<dt><code>col_names</code></dt>
<dd><code>"character"</code> vector naming columns in the array.</dd>


<dt><code>row_names</code></dt>
<dd><code>"character"</code> vector naming rows in the array.</dd>


<dt><code>row_id</code></dt>
<dd><code>"integer"</code> vector providing row indices of all runs.</dd>


<dt><code>col_id</code></dt>
<dd><code>"integer"</code> vector providing column indices of all runs.</dd>


<dt><code>panel_id</code></dt>
<dd><code>"factor"</code> naming the panel to which experiment belong.</dd>


</dl>

adpcr-class: Class `"adpcr"` - end-point array digital PCR experiments

Description

Arguments

Slots

Author

Details

See Also

Examples