ddpcRquant

Cluster raw data from QX100 and QX200 systems.

Analysis, visualisation and simulation of digital polymerase chain
reaction (dPCR) (Burdukiewicz et al. (2016) <doi:10.1016/j.bdq.2016.06.004>).
Supports data formats of commercial systems (Bio-Rad QX100 and
QX200; Fluidigm BioMark) and other systems.

Andrej-Nikolai Spiess

dpcR

Digital PCR Analysis

Michal Burdukiewicz

Stefan Roediger

Bart Jacobs

Piotr Sobczyk

ddpcRquant function

<dl><dt>path</dt>
<dd><code>character</code> path to diectory with raw data.</dd>
<dt>threshold.int</dt>
<dd><code>numeric</code> probability of the threshold quantile.</dd>
<dt>reps</dt>
<dd><code>numeric</code> vector representing the number of replications.</dd>
<dt>blocks</dt>
<dd><code>numeric</code> vector representing the number of blocks.</dd>
<dt>threshold.manual</dt>
<dd>if <code>numeric</code>, the value is used as the threshold. If 
<code>NULL</code>, the threshold is calculated automatically.</dd></dl>

Arguments

Wim Trypsteen, Matthijs Vynck, Jan De Neve, Pawel Bonczkowski, Maja Kiselinova, 
Eva Malatinkova, Karen Vervisch, Olivier Thas, Linos Vandekerckhove, Ward De Spiegelaere.

Author

Quantify droplets — ddpcRquant

<dl>

<dt>path</dt>
<dd><code>character</code> path to diectory with raw data.</dd>


<dt>threshold.int</dt>
<dd><code>numeric</code> probability of the threshold quantile.</dd>


<dt>reps</dt>
<dd><code>numeric</code> vector representing the number of replications.</dd>


<dt>blocks</dt>
<dd><code>numeric</code> vector representing the number of blocks.</dd>


<dt>threshold.manual</dt>
<dd>if <code>numeric</code>, the value is used as the threshold. If 
<code>NULL</code>, the threshold is calculated automatically.</dd>

</dl>

ddpcRquant: Quantify droplets

Description

Usage

Value

Arguments

Author

References