dpcR (version 0.6)

extract_run: Extract Digital PCR Run

Description

Extract runs from a dpcr object while preserving all other attributes.

Usage

extract_run(input, id)

Value

The object of the input's class (adpcr or dpcr).

Arguments

input

object of the class adpcr or dpcr.

id

vector of indices or names of runs.

Author

Michal Burdukiewicz.

Details

The extract_run function allows to choose one or more panels from an object of the adpcr or dpcr class and save it without changing other attributes. It is the most recommended method of extracting a subset from an array of panels, because it preserves class and structure of the object in contrary to standard operator Extract.

See Also

Opposite function: bind_dpcr Extract multiple runs belonging to an experiment of assay: extract_dpcr

Examples

#sample extracting
panels <- sim_adpcr(10, 40, 1000, pos_sums = FALSE, n_panels = 50)
single_panel <- extract_run(panels, 5)
random_three <- extract_run(panels, sample.int(ncol(panels), 3))
all_but_one <- extract_run(panels, -5)

#the same for fluorescence data
fluos <- sim_dpcr(10, 40, 1000, pos_sums = FALSE, n_exp = 50, 
                   fluo = list(0.1, 0))
single_fluo <- extract_run(fluos, 5)