ebimetagenomics (version 0.6)

getProjectsList: Download the EMG projects list into a data frame

Description

This downloads an EMG projects list (detailed info) into an R data frame for subsequent analysis.

Usage

getProjectsList()

Value

An R data frame containing a list of all public EMG projects, one row per project. The row names correspond to the accession ID.

See Also

getProjectSummary, projectSamples

Examples

# NOT RUN {
pl = getProjectsList()
str(pl)

# Find big projects
biggies = pl$accession[pl$samples_count >= 100]
ps = getProjectSummary(biggies[3])

# Find some 16S projects
pl$accession[agrep("16S",pl$study_name)]

# Look up primary accession using secondary accession
pl$accession[pl$secondary_accession=="SRP047083"]
# }