ecospat v2.0
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Spatial Ecology Miscellaneous Methods
Colection of R functions and data sets for the support of spatial ecology analyses with a focus on pre-, core and post- modelling analyses of species distribution, niche quantification and community assembly., written by current and former members and collaborators of the ecospat group of Antoine Guisan, Department of Ecology and Evolution (DEE) & Institute of Earth Surface Dynamics (IDYST), University of Lausanne, Switzerland.
Functions in ecospat
| Name | Description | |
| ecospat.binary.model | Generate Binary Models | |
| ecospat.boyce | Calculate Boyce Index | |
| ecospat.cv.gbm | GBM Cross Validation | |
| ecospat.cor.plot | Correlation Plot | |
| ecospat.ESM.EnsembleModeling | Ensamble of Small Models: Evaluates and Averages Simple Bivariate Models To ESMs | |
| ecospat.env | Package Environment | |
| ecospat.cv.me | Maxent Cross Validation | |
| ecospat.cv.glm | GLM Cross Validation | |
| ecospat.cv.example | Cross Validation Example Function | |
| ecospat.cv.rf | RandomForest Cross Validation | |
| ecospat.Epred | Prediction Mean | |
| ecospat.ESM.EnsembleProjection | Ensamble of Small Models: Projects Calibrated ESMs Into New Space Or Time. | |
| ecospat.makeDataFrame | Make Data Frame | |
| ecospat.max.tss | Maximum TSS | |
| ecospat.mantel.correlogram | Mantel Correlogram | |
| ecospat.maxentvarimport | Maxent Variable Importance | |
| ecospat.ESM.Projection | Ensamble of Small Models: Projects Simple Bivariate Models Into New Space Or Time | |
| ecospat.mess | MESS | |
| ecospat.ESM.Modeling | Ensamble of Small Models: Calibration of Simple Bivariate Models | |
| ecospat.exdet | An EXtrapolation DETection Tool For The Modeling Of Species Distributions | |
| ecospat.grid.clim.dyn | Dynamic Occurrence Densities Grid | |
| ecospat.max.kappa | Maximum Kappa | |
| ecospat.mpa | Minimal Predicted Area | |
| ecospat.niche.similarity.test | Niche Similarity Test | |
| ecospat.niche.dyn.index | Niche Expansion, Stability, and Unfilling | |
| ecospat.npred | Number Of Predictors | |
| ecospat.occ.desaggregation | Species Occurrences Desaggregation | |
| ecospat.permut.glm | GLM Permutation Function | |
| ecospat.niche.equivalency.test | Niche Equivalency Test | |
| ecospat.niche.overlap | Calculate Niche Overlap | |
| ecospat.meva.table | Model Evaluation For A Given Threshold Value | |
| ecospat.migclim | Implementing Dispersal Into Species Distribution Models | |
| ecospat.plot.tss | Plot True skill statistic (TSS) | |
| ecospat.rand.pseudoabsences | Sample Pseudo-Absences | |
| ecospat.plot.contrib | Plot Variables Contribution | |
| ecospat.plot.kappa | Plot Kappa | |
| ecospat.plot.niche.dyn | Niche Categories and Species Density | |
| ecospat.plot.mess | Plot MESS | |
| ecospat.plot.overlap.test | Plot Overlap Test | |
| ecospat.plot.niche | Plot Niche | |
| ecospat.sample.envar | Sample Environmental Variables | |
| ecospat.SESAM.prr | SESAM Probability Ranking Rule | |
| ecospat.testNiche.inv | Test Data For The Niche Dynamics Analysis In The Invaded Range Of A Hypothetical Species | |
| ecospat.testNiche | Test Data For The Niche Overlap Analysis | |
| ecospat.shift.centroids | Draw Centroid Arrows | |
| ecospat.testData | Test Data For The Ecospat package | |
| ecospat.testNiche.nat | Test Data For The Niche Dynamics Analysis In The Native Range Of A Hypothetical Species | |
| ecospat.testTree | Test Tree For The Ecospat package | |
| ecospat.cons_Cscore | Constrained Co-Occurrence Analysis. | |
| ecospat.caleval | Calibration And Evaluation Dataset | |
| ecospat.varpart | Variation Partitioning For GLM Or GAM | |
| ecospat-package | Spatial Ecology Miscellaneous Methods | |
| ecospat.adj.D2.glm | Calculate An Adjusted D2 | |
| ecospat.co_occurrences | Species Co-Occurrences | |
| ecospat.cohen.kappa | Cohen's Kappa | |
| ecospat.calculate.pd | Calculate Phylogenetic Diversity Measures | |
| ecospat.CommunityEval | Community Evaluation | |
| No Results! | ||
Last month downloads
Details
| Date | 2016-05-26 |
| LazyData | true |
| URL | http://www.unil.ch/ecospat/home/menuguid/ecospat-resources/tools.html |
| License | GPL |
| NeedsCompilation | no |
| Packaged | 2016-05-26 13:46:13 UTC; vdicolab |
| Repository | CRAN |
| Date/Publication | 2016-05-26 17:29:23 |
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