enRich is an R package that performs a joint statistical modelling of ChIP-seq data, accounting for technical/biological replicates, multiple conditions and the different IP efficiencies of individual experiments.
| Package: | enRich |
| Type: | Package |
| Version: | 3.1 |
| Date: | 2020-02-03 |
| Depends: | R(>= 3.2.2), parallel |
| License: | GPL (>=2) |
| LazyLoad: | yes |
mainfunctions: mix, mix.joint, mrf, mrf.joint, enrich.mix, enrich.mrf
Bao et al. Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data. BMC Bioinformatics 2013, 14:169 DOI:10.1186/1471-2105-14-169. Bao et al. Joint modelling of ChIP-seq data via a Markov random field model, Biostatistics 2014, 15(2):296-310 DOI:10.1093/biostatistics/kxt047.