Rdocumentation
powered by
Learn R Programming
enRich (version 3.1)
Analysis of Multiple ChIP-Seq Data
Description
Joint statistical modelling of ChIP-seq data, accounting for technical/biological replicates, multiple conditions and different ChIP efficiencies of the individual experiments.
.
.
Copy Link
Link to current version
Version
Version
3.1
3.0
2.0
1.0
Install
install.packages('enRich')
Monthly Downloads
13
Version
3.1
License
GPL-2
Maintainer
Yanchun Bao
Last Published
March 5th, 2020
Functions in enRich (3.1)
Search all functions
enrich.mix
Detection of enriched and differentially bound regions for fitting results of
mix
and
mix.joint
.
p300cbp.200bp
Example Data
mix.joint
Joint fitting of mixture of Poisson or NB densities to ChIP-seq experiments.
mrf.joint
Joint fitting of a one-dimensional Markov random field model to multiple ChIP-seq datasets.
enrich.mrf
Detection of enriched and differentially bound regions for fitting results of
mrf
and
mrf.joint
.
enRich-package
Analysis of multiple ChIP-seq data.
IPE
Estimating the ImmunoPrecipitation (IP) efficiency of a ChIP-seq experiment.
mix
Fitting mixture of two densities, either Poisson or Negative Binomial, to ChIP-seq data.
FDR
Identification of enriched regions by controlling a given FDR level
mrf
Fitting a one-dimensional Markov random field mixture model to ChIP-seq data.
p300cbp.1000bp
Example Data