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epitools (version 0.5-2)
Epidemiology Tools
Description
EpiTools: R Package for Epidemiologic Data and Graphics
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Install
install.packages('epitools')
Monthly Downloads
9,555
Version
0.5-2
License
GPL version 2 or newer
Maintainer
Tomas Aragon
Last Published
March 22nd, 2020
Functions in epitools (0.5-2)
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epidate
Convert dates into multiple legible formats
ormidp.test
odds ratio test for independence (p value) for a 2x2 table
binom.conf.int
Confidence intervals for binomial counts or proportions
kapmeier
Implements product-limit (Kaplan-Meier) method
epitab
Epidemiologic tabulation for a cohort or case-control study
ageadjust.direct
Age standardization by direct method, with exact confidence intervals
expand.table
Expand contingency table into individual-level data set
colorbrewer
Display and create ColorBrewer palettes
epitable
Create r x c contigency table (exposure levels vs. binary outcome)
colors.plot
Plots R's 657 named colors for selection
as.week
Convert dates object in 'disease week' for plotting epidemic curves
oddsratio
Odds ratio estimation and confidence intervals
expected
Expected values in a table
ageadjust.indirect
Age standardization by indirect method, with exact confidence intervals
epicurve
Construct an epidemic curve
pois.conf.int
Confidence intervals for Poisson counts or rates
rateratio
Rate ratio estimation and confidence intervals
wcgs
Western Collaborative Group Study data
oswego
Outbreak of Gastrointestinal Illness in Oswego County, 1940
as.month
Convert dates into months of the year for plotting epidemic curves
tab2by2.test
Comparative tests of independence in rx2 contigency tables
or.midp
Odds ratio estimation and confidence intervals using mid-p method
riskratio
Risk ratio estimation and confidence intervals
ratetable
Create r x 2 count and person-time table for calculating rates
table.margins
Marginal totals of a table
wnv
West Nile Virus human cases reported in California, USA, as of December 14, 2004
rate2by2.test
Comparative tests of independence in rx2 rate tables
julian2date
Convert a julian date into standard a date format
as.hour
Convert date-time object into hour units