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explorase (version 1.36.0)
GUI for exploratory data analysis of systems biology data
Description
explore and analyze *omics data with R and GGobi
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Version
1.36.0
1.34.0
1.32.0
1.30.0
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Version
1.36.0
License
GPL-2
Maintainer
Michael Lawrence
Last Published
January 1st, 1970
Functions in explorase (1.36.0)
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explorase
Start exploRase
exp_entitiesInList
Get the entities in a list
exp_addEntityType
Add an entity type
exp_findPatterns
Find Patterns
exp_listFrame
Get entity lists
exp_isRunning
Check whether exploRase is running
exp_calcResiduals
Calculate residuals
exp_calcMahalanobisDist
Calculate Mahalanobis distance
exp_ggobi
Get the GGobi session
exp_entityType
Get the current entity type
exp_calcCorrelationDist
Calculate correlation distance
exp_listSelection
Get selected lists
exp_filterRules
Get filter rules
exp_colorEntities
Coloring entities
exp_loadLists
Load entity lists
exp_close
Close exploRase
exp_designFactors
Get the exp. design factors
exp_designFrame
Get the exp. design
exp_showResults
Show analysis results
exp_entitySelection
Get selected entities
exp_calcZeroCorDist
Calculate zero-correlation distance
exp_calcCanberraDist
Calculate Canberra distance
exp_loadData
Load experimental data
exp_addFilterRule
Add a filter rule
exp_newList
Create an entity list
exp_showClustering
Show a hierarchical clustering
exp_removeFilterRules
Remove filter rules
exp_toggleFilterRules
Toggle filter rules
exp_loadProject
Load a project
exp_loadInfo
Load entity metadata
exp_loadFiles
Load files
exp_calcEuclideanDist
Calculate Euclidean distance
exp_dataset
Get experimental data
bioc_integration
ExpressionSet Integration
exp_entityTypes
Get all entity types
exp_calcDiff
Calculate difference
exp_showPatterns
Show patterns
exp_calcAngleDist
Caclulate angle distance
exp_designSelection
Get selected conditions
exp_loadDesign
Load experimental design
exp_entityFrame
Get entity metadata