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explorase (version 1.36.0)

GUI for exploratory data analysis of systems biology data

Description

explore and analyze *omics data with R and GGobi

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Version

Version

1.36.0

License

GPL-2

Maintainer

Michael Lawrence

Last Published

February 15th, 2017

Functions in explorase (1.36.0)

explorase

Start exploRase
exp_entitiesInList

Get the entities in a list
exp_addEntityType

Add an entity type
exp_findPatterns

Find Patterns
exp_listFrame

Get entity lists
exp_isRunning

Check whether exploRase is running
exp_calcResiduals

Calculate residuals
exp_calcMahalanobisDist

Calculate Mahalanobis distance
exp_ggobi

Get the GGobi session
exp_entityType

Get the current entity type
exp_calcCorrelationDist

Calculate correlation distance
exp_listSelection

Get selected lists
exp_filterRules

Get filter rules
exp_colorEntities

Coloring entities
exp_loadLists

Load entity lists
exp_close

Close exploRase
exp_designFactors

Get the exp. design factors
exp_designFrame

Get the exp. design
exp_showResults

Show analysis results
exp_entitySelection

Get selected entities
exp_calcZeroCorDist

Calculate zero-correlation distance
exp_calcCanberraDist

Calculate Canberra distance
exp_loadData

Load experimental data
exp_addFilterRule

Add a filter rule
exp_newList

Create an entity list
exp_showClustering

Show a hierarchical clustering
exp_removeFilterRules

Remove filter rules
exp_toggleFilterRules

Toggle filter rules
exp_loadProject

Load a project
exp_loadInfo

Load entity metadata
exp_loadFiles

Load files
exp_calcEuclideanDist

Calculate Euclidean distance
exp_dataset

Get experimental data
bioc_integration

ExpressionSet Integration
exp_entityTypes

Get all entity types
exp_calcDiff

Calculate difference
exp_showPatterns

Show patterns
exp_calcAngleDist

Caclulate angle distance
exp_designSelection

Get selected conditions
exp_loadDesign

Load experimental design
exp_entityFrame

Get entity metadata