farms (version 1.24.0)

INI_Calls-class: Class INI_Calls

Description

This is a class representation for an INI_calls-class object. The INI_calls-class consists of two instances of exprSet-class, containing an informative exprSet and a non-informative exprSet.

Objects from the Class

Objects can be created using the function INIcalls.

See Also

expFarms, qFarms,lFarms,INIcalls

Examples

data(testAffyBatch)
eset <- expFarms(testAffyBatch, bgcorrect.method = "none", pmcorrect.method = "pmonly", normalize.method = "constant") 
INIs <- INIcalls(eset)  # apply I/NI calls
summary(INIs)
plot(INIs) # draws a density plot of I/NI-calls
I_data <- getI_Eset(INIs) # affybatch containing only informative probe sets
NI_data <- getNI_Eset(INIs) # affybatch containing only non-informative probe sets
I_probes <- getI_ProbeSets(INIs) # vector containing only informative probe sets names
NI_probes <- getNI_ProbeSets(INIs) # vector containing only  non-informative probe sets names