farms (version 1.24.0)

FARMS - Factor Analysis for Robust Microarray Summarization

Description

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

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Version

1.24.0

License

LGPL (>= 2.1)

Maintainer

DjorkArne Clevert

Last Published

February 15th, 2017

Functions in farms (1.24.0)

summary-methods

Summary of I/NI-calls

lFarms

lFarms expression measure

INIcalls-methods

Dimension reduction based on informative genes

testAffyBatch

AffyBatch instance testAffyBatch

generateExprVal.method.farms

Generate an expression value from the probes informations

getI_ProbeSets

Method to generate a vector of informative probe set names

getI_Eset-methods

Method to generate an ExpressionSet of informative genes

getNI_Eset-methods

Method to generate an ExpressionSet of non-informative genes

dummy

Example cdfenv

expFarms

Factor Analysis for Robust Microarray Summarization

plot-methods

Visualizes the distribution of informative and non-informatives genes

qFarms

qFarms expression measure

getNI_ProbeSets

Method to generate a vector of non-informative probe set names

INI_Calls-class

Class INI_Calls