farms (version 1.24.0)

summary-methods: Summary of I/NI-calls

Description

This function determinates the percentage of informative genes of a given instance of of INI_Calls-class which has been summarized by expFarms, qFarms or lFarms before.

Usage

## S3 method for class 'INI_Calls':
summary(object,...)

Arguments

object

An instance of INI_Calls-class .

...

extra arguments to pass to the respective function

Value

• exprSet-class

See Also

expFarms, qFarms,lFarms,plot,INIcalls

Examples

data(testAffyBatch)
eset <- expFarms(testAffyBatch, bgcorrect.method = "none", pmcorrect.method = "pmonly", normalize.method = "constant") 
INIs <- INIcalls(eset)  # apply I/NI calls
summary(INIs)
plot(INIs) # draws a density plot of I/NI-calls
I_data <- getI_Eset(INIs) # affybatch containing only informative probe sets
NI_data <- getNI_Eset(INIs) # affybatch containing only non-informative probe sets
I_probes <- getI_ProbeSets(INIs) # vector containing only informative probe sets names
NI_probes <- getNI_ProbeSets(INIs) # vector containing only  non-informative probe sets names