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fat2Lpoly (version 1.2.6)

Two-Locus Family-Based Association Test with Polytomous Outcome

Description

Performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models defined by some design matrix.

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Version

Install

install.packages('fat2Lpoly')

Monthly Downloads

196

Version

1.2.6

License

GPL

Maintainer

Alexandre BUREAU

Last Published

July 23rd, 2025

Functions in fat2Lpoly (1.2.6)

design.endo2disease

Setting-up design matrices for the endophenotype-to-disease model.
fat2Lpoly.allSNPs

Example results output by the function fat2Lpoly.withinR
design.full

Setting-up design matrices for a full polytomous model with two biallelic markers.
design.1locus

Setting-up design matrices for a polytomous model with a single biallelic marker.
design.dichotomous

Setting-up the design matrix for a logistic model with two biallelic markers.
get.scores.pvalues

function to compute scores and p-values
read.merlin.files

function to read input files in Merlin format
fat2Lpoly.withinR

Two-locus Family-based Association Test with Polytomous Outcome (all arguments within R)
fat2Lpoly

Two-locus Family-based Association Test with Polytomous Outcome
ped.x.all

Example dataset returned by the function read.merlin.files
fat2Lpoly-internal

Internal fat2Lpoly Functions