fat2Lpoly.allSNPs

This list is an example of output from the function <code>fat2Lpoly.withinR</code>. It is provided to test the function <code>get.scores.pvalues</code> by executing the example code in the <code>get.scores.pvalues</code> documentation.

datasets

Performs family-based association tests with a polytomous outcome under 2-locus and 1-locus models
defined by some design matrix.

Alexandre BUREAU

fat2Lpoly

Two-Locus Family-Based Association Test with Polytomous Outcome

Alexandre Bureau

Jordie Croteau

fat2Lpoly.allSNPs function

A list of two objects:<dl>
 <dt>scores.covs.all.SNPs</dt>
<dd>list of length 'nrow(<code>snp.names.mat</code>)', each element of which contains the estimates of the scores and covariances of all the families.</dd> <dt>snp.names.mat</dt>
<dd>(same matrix as provided as argument) matrix of one or two columns giving the names of the SNPs (if one column matrix) or pairs of SNPs (if two columns matrix) to be analyzed. These SNPs represent all or part of the SNPs in the data files <code>datfilenames</code>.</dd>
</dl>

Format

Example results output by the function fat2Lpoly.withinR — fat2Lpoly.allSNPs

A list of two objects:<dl>
 <dt>scores.covs.all.SNPs</dt>
<dd>list of length 'nrow(<code>snp.names.mat</code>)', each element of which contains the estimates of the scores and covariances of all the families.</dd>

 <dt>snp.names.mat</dt>
<dd>(same matrix as provided as argument) matrix of one or two columns giving the names of the SNPs (if one column matrix) or pairs of SNPs (if two columns matrix) to be analyzed. These SNPs represent all or part of the SNPs in the data files <code>datfilenames</code>.</dd>


</dl>

fat2Lpoly.allSNPs: Example results output by the function `fat2Lpoly.withinR`

Description

Usage

Arguments

Format

Examples