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fields (version 6.7.5)

Tools for spatial data

Description

Fields is for curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, and thin plate splines, Kriging and compact covariances for large data sets. The splines and Kriging methods are supporting by functions that can determine the smoothing parameter (nugget and sill variance) by cross validation and also by restricted maximum likelihood. A major feature is that any covariance function implemented in R with the (simple) fields format can be used for spatial prediction. Some tailored optimization functions are supplied for finding the MLEs for the Matern family of covariances. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of sparse matrix methods for large data sets and currently requires the sparse matrix (spam) package for testing and use with large data sets. But spam is not required for the standard spatial functions. Use help(fields) to get started and for an overview. The fields source code is heavily commented and provides useful explanations of numerical details in addition to the manual pages.

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Version

Install

install.packages('fields')

Monthly Downloads

52,628

Version

6.7.5

License

GPL (>= 2)

Maintainer

Douglas Nychka

Last Published

April 18th, 2013

Functions in fields (6.7.5)

rdist

Euclidean distance matrix
fields.hints

fields - graphics hints
Exponential, Matern, Radial Basis

Covariance functions
colorbar.plot

Adds color scale strips to an existing plot.
Wendland

Wendland family of covariance functions and supporting numerical functions
BD

Data frame of the effect of buffer compositions on DNA strand displacement amplification. A 4-d regression data set with with replication. This is a useful test data set for exercising function fitting methods.
as.image

Creates image from irregular x,y,z
add.image

Adds an image to an existing plot.
US

Plot of the US with state boundaries
Colorado Monthly Meteorological Data

Monthly surface meterology for Colorado 1895-1997
US.dat

Outline of coterminous US and states.
bplot.xy

Boxplots for conditional distribution
poly.image

Image plot for cells that are irregular quadrilaterals.
predict.Krig

Evaluation of Krig spatial process estimate.
predict.se

Standard errors of predictions
Krig.Amatrix

Smoother (or "hat") matrix relating predicted values to the dependent (Y) values.
minitri

Mini triathlon results
fields testing scripts

Testing fields functions
interp.surface

Fast bilinear interpolator from a grid.
CO2

Simulated global CO2 observations
summary.ncdf

Summarizes a netCDF file handle
predict.derivative

Predicted derivatives
rdist.earth

Great circle distance matrix
WorldBankCO2

Carbon emissions and demographic covariables by country for 1999.
stats.bin

Bins data and finds some summary statistics.
fields exported FORTRAN

FORTRAN subroutines used in fields functions
sim.rf

Simulates a random field
rat.diet

Experiment studying an appetite supressant in rats.
summary.Krig

Summary for Krig spatial process estimate
arrow.plot

Adds arrows to a plot
set.panel

Specify a panel of plots
as.surface

Creates an "surface" object from grid values.
print.Krig

Print kriging fit results.
splint

Cubic spline interpolation
stats

Calculate summary statistics
fields.grid

Using MKrig for predicting on a grid.
ozone

Data set of ozone measurements at 20 Chicago monitoring stations.
Krig.null.function

Default function to create fixed matrix part of spatial process model.
pushpin

Adds a "push pin" to an existing 3-d plot
yline

Draw horizontal lines
image.cov

Exponential, Matern and general covariance functions for 2-d gridded locations.
REML.test

Maximum Likelihood estimates for some Matern covariance parameters.
grid list

Some simple functions for working with gridded data and the grid format (grid.list) used in fields.
quilt.plot

Image plot for irregular spatial data.
image.smooth

Kernel smoother for irregular 2-d data
tim.colors

Some useful color tables for images and tools to handle them.
The Engines:

Basic linear algebra utilities and other computations supporting the Krig function.
fields

fields - tools for spatial data
fields internal

Fields internal and secondary functions
flame

Response surface experiment ionizing a reagent
bplot

boxplot
xline

Draw a vertical line
RCMexample

3-hour precipitation fields from a regional climate model
ozone2

Daily 8-hour ozone averages for sites in the Midwest
Tps

Thin plate spline regression
predict.se.Krig

Standard errors of predictions for Krig spatial process estimate
fields-stuff

Fields supporting functions
vgram.matrix

Computes a variogram from an image
vgram

Finds a traditional or robust variogram for spatial data.
transformx

Linear transformation
NorthAmericanRainfall

Observed North American summer precipitation from the historical climate network.
spam2lz

Conversion of formats for sparse matrices
RMprecip

Monthly total precipitation (mm) for August 1997 in the Rocky Mountain Region and some gridded 4km elevation data sets (m).
mKrig

"micro Krig" Spatial process estimate of a curve or surface, "kriging" with a known covariance function.
mKrig.MLE

maximizes likelihood for the process marginal variance (rho) and nugget standard deviation (sigma) parameters (e.g. lambda) over a list of covariance models or a grid of covariance parameter values.
plot.Krig

Diagnostic and summary plots of a Kriging or spline object
Krig

Kriging surface estimate
lennon

Gray image of John Lennon.
image2lz

Some simple functions for subsetting images
smooth.2d

Kernel smoother for irregular 2-d data
surface.Krig

Plots a surface and contours
predict.surface

Evaluates a fitted function or its standard errors as a surface object
qsreg

Quantile or Robust spline regression
gcv.Krig

Finds profile likelihood and GCV estimates of smoothing parameters for splines and Kriging.
Covariance functions

Exponential family, radial basis functions,cubic spline, compactly supported Wendland family and stationary covariances.
image.plot

Draws image plot with a legend strip for the color scale based on either a regular grid or a grid of quadrilaterals.
QTps

Robust and Quantile smoothing using a thin-plate spline
sreg

Smoothing spline regression
drape.plot

Perspective plot draped with colors in the facets.
cover.design

Computes Space-Filling "Coverage" designs using Swapping Algorithm
sim.Krig

Conditonal simulation of a spatial process
ribbon.plot

Adds to an existing plot, a ribbon of color, based on values from a color scale, along a sequence of line segments.
world

Plot of the world
plot.surface

Plots a surface
krig.image

Spatial process estimate for large irregular 2-d dats sets.
Wimage.info

Finds key indices related to a 2-d multiresolution
Wimage.cov

Functions for W-transform based covariance models
W.info

Gives indexing imfomration for a wavelet decompostion
poisson.cov

Poisson spherical covariance function
Wimage.info.plot

Plot to check 2-d multiresolution indexing
plot.Wimage

Plots 2-d wavelet coefficents by level and type
Wtransform

Quadratic W wavelet transform for 1-d vectors or rectangular or cylindrical images