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fields (version 8.4-1)

Tools for Spatial Data

Description

For curve, surface and function fitting with an emphasis on splines, spatial data and spatial statistics. The major methods include cubic, and thin plate splines, Kriging and compact covariances for large data sets. The splines and Kriging methods are supported by functions that can determine the smoothing parameter (nugget and sill variance) and other covariance parameters by cross validation and also by restricted maximum likelihood. For Kriging there is an easy to use function that also estimates the correlation scale (range). A major feature is that any covariance function implemented in R and following a simple fields format can be used for spatial prediction. There are also many useful functions for plotting and working with spatial data as images. This package also contains an implementation of sparse matrix methods for large spatial data sets and currently requires the sparse matrix (spam) package. Use help(fields) to get started and for an overview. The fields source code is deliberately commented and provides useful explanations of numerical details in addition to the manual pages. The commented source code can be viewed by expanding the source code file (ending in tar.gz) and looking in the R subdirectory. Please cite fields along with its DOI in your publications!

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Version

Install

install.packages('fields')

Monthly Downloads

34,917

Version

8.4-1

License

GPL (>= 2)

Maintainer

Douglas Nychka

Last Published

May 5th, 2016

Functions in fields (8.4-1)

arrow.plot

Adds arrows to a plot
bplot.xy

Boxplots for conditional distribution
colorbar.plot

Adds color scale strips to an existing plot.
Krig.null.function

Default function to create fixed matrix part of spatial process model.
as.surface

Creates an "surface" object from grid values.
RMprecip

Monthly total precipitation (mm) for August 1997 in the Rocky Mountain Region and some gridded 4km elevation data sets (m).
WorldBankCO2

Carbon emissions and demographic covariables by country for 1999.
compactToMat

Convert Matrix from Compact Vector to Standard Form
Wendland

Wendland family of covariance functions and supporting numerical functions
Chicago ozone test data

Data set of ozone measurements at 20 Chicago monitoring stations.
BD

Data frame of the effect of buffer compositions on DNA strand displacement amplification. A 4-d regression data set with with replication. This is a useful test data set for exercising function fitting methods.
fields testing scripts

Testing fields functions
fields-stuff

Fields supporting functions
bplot

boxplot
CO2

Simulated global CO2 observations
REML.test

Maximum Likelihood estimates for some Matern covariance parameters.
Colorado Monthly Meteorological Data

Monthly surface meterology for Colorado 1895-1997
surface.Krig

Plots a surface and contours
sim.rf

Simulates a Stationary Gaussian random field
plot.surface

Plots a surface
stats.bin

Bins data and finds some summary statistics.
fields

fields - tools for spatial data
spam2lz

Conversion of formats for sparse matrices
splint

Cubic spline interpolation
US

Plot of the US with state boundaries
ribbon.plot

Adds to an existing plot, a ribbon of color, based on values from a color scale, along a sequence of line segments.
Exponential, Matern, Radial Basis

Covariance functions
ozone2

Daily 8-hour ozone averages for sites in the Midwest
rdist.earth

Great circle distance matrix or vector
transformx

Linear transformation
set.panel

Specify a panel of plots
summary.Krig

Summary for Krig or spatialProcess estimated models.
stats

Calculate summary statistics
qsreg

Quantile or Robust spline regression
flame

Response surface experiment ionizing a reagent
add.image

Adds an image to an existing plot.
CovarianceUpper

Evaluate covariance over upper triangle of distance matrix
image.smooth

Kernel smoother for irregular 2-d data
rdist

Euclidean distance matrix or vector
spatialProcess

Estimates a spatial process model.
gcv.Krig

Finds profile likelihood and GCV estimates of smoothing parameters for splines and Kriging.
RCMexample

3-hour precipitation fields from a regional climate model
predictSurface

Evaluates a fitted function or the prediction error as a surface that is suitable for plotting with the image, persp, or contour functions.
as.image

Creates image from irregular x,y,z
fields.grid

Using MKrig for predicting on a grid.
xline

Draw a vertical line
print.Krig

Print kriging fit results.
yline

Draw horizontal lines
minitri

Mini triathlon results
poly.image

Image plot for cells that are irregular quadrilaterals.
Krig.replicates

Collapse repeated spatial locations into unique locations
fields exported FORTRAN

FORTRAN subroutines used in fields functions
interp.surface

Fast bilinear interpolator from a grid.
vgram.matrix

Computes a variogram from an image
tim.colors

Some useful color tables for images and tools to handle them.
US.dat

Outline of coterminous US and states.
predict.Krig

Evaluation of Krig spatial process estimate.
grid list

Some simple functions for working with gridded data and the grid format (grid.list) used in fields.
fields.hints

fields - graphics hints
summary.ncdf

Summarizes a netCDF file handle
smooth.2d

Kernel smoother for irregular 2-d data
mKrig.MLE

Maximizes likelihood for the process marginal variance (rho) and nugget standard deviation (sigma) parameters (e.g. lambda) over a many covariance models or covariance parameter values.
plot.Krig

Diagnostic and summary plots of a Kriging, spatialProcess or spline object.
sim.Krig

Conditional simulation of a spatial process
quilt.plot

Image plot for irregular spatial data.
fields internal

Fields internal and secondary functions
vgram

Traditional or robust variogram methods for spatial data
Tps

Thin plate spline regression
cover.design

Computes Space-Filling "Coverage" designs using Swapping Algorithm
Covariance functions

Exponential family, radial basis functions,cubic spline, compactly supported Wendland family and stationary covariances.
QTps

Robust and Quantile smoothing using a thin-plate spline
predictSE

Standard errors of predictions for Krig spatial process estimate
NorthAmericanRainfall

Observed North American summer precipitation from the historical climate network.
image2lz

Some simple functions for subsetting images
The Engines:

Basic linear algebra utilities and other computations supporting the Krig function.
drape.plot

Perspective plot draped with colors in the facets.
rat.diet

Experiment studying an appetite supressant in rats.
pushpin

Adds a "push pin" to an existing 3-d plot
Krig

Kriging surface estimate
world

Plot of the world
MLESpatialProcess

Estimates key covariance parameters for a spatial process.
supportsArg

Tests if function supports a given argument
sreg

Cubic smoothing spline regression
Krig.Amatrix

Smoother (or "hat") matrix relating predicted values to the dependent (Y) values.
lennon

Gray image of John Lennon.
image.plot

Draws image plot with a legend strip for the color scale based on either a regular grid or a grid of quadrilaterals.
mKrig

"micro Krig" Spatial process estimate of a curve or surface, "kriging" with a known covariance function.
image.cov

Exponential, Matern and general covariance functions for 2-d gridded locations.