Learn R Programming

flowBeads

Bioconductor package for working with calibration beads in flow cytometry. Based on flowCore package.

Copy Link

Version

Version

1.10.0

License

Artistic-2.0

Maintainer

Nikolas Pontikos

Last Published

February 15th, 2017

Functions in flowBeads (1.10.0)

GatedBeadFlowFrame-class

GatedBeadFlowFrame
BeadFlowFrame-class

BeadFlowFrame
getMEFparams

getMEFparams
length

length
beads1

Dako beads on day 1
mefTransform

Logicle transformation constructor
getDate

getDate
hasMEF

hasMEF
relativeNormalise

relativeNormalise
show

BeadFlowFrame
flowBeads-package

flowBeads
beads2

Dako beads on day 2
getParams

getParams
getTransformFunction

getTransformFunction
cytocalmef

Cytocal config file
gateBeads

gateBeads
plot

Plot the results of the clustering. Plot only the requested channel which should have a corresponding entry in the MEF files
getClusteringStats

getClusteringStats
toMEF

toMEF
absoluteNormalise

absoluteNormalise
generateReport

generateReport
getMEFtransform

getMEFtransform
dakomef

Dako config file