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flowFit (version 1.10.0)

Estimate proliferation in cell-tracking dye studies

Description

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

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Version

Version

1.10.0

License

Artistic-2.0

Maintainer

Davide Rambaldi

Last Published

February 15th, 2017

Functions in flowFit (1.10.0)

parentFittingData-class

Class "parentFittingData"
proliferationFittingData-class

Class "proliferationFittingData"
getGenerations

Get percentage of cells for generation in a flowFit model
parentFitting

Fitting a parent population
generationsDistance

Calculate the distance between 2 generations of cells on the FACS scale
flowFit-package

Estimate proliferation in cell-tracking dye studies
plot-methods

Very basic plotting of flowFit objects: proliferationFittingData and parentFittingData
proliferationFitting

Estimate proliferation in cell-tracking dye studies
proliferationGrid

proliferationGrid function for plotting
proliferationIndex

proliferation index calculator
logTicks

Generate logTicks for FACS plotting