qaProcess.2DStatsPlot: Creates a QA process for 2D summary statistic comparisons across
multiple samples
Description
This function takes a list of
flowSet as input and
creates all necessary output for a '2DStatsPlot' type QA
process. Objects created by this function can be laid out as HTML
using writeQAReport.
Flow parameters to be compared across multiple samples
outdir
The directory to which the graphical output is to be
saved. If multiple QA processes are to be combined, make sure to use
the same directory every time.
thresh
A numeric value between 0 and 1 which is used as a threshold
by the outlier detection algorithm
func
Summary statistic function to be applied to each parameter
in a flowFrame (mean,median etc)
sum.dimensions
The dimensions of summary plot generated in inches, default
is NULL where the dimensions are automatically selected
det.dimensions
the dimensions of each sub image generated by the QA
process in inches, default is NULL where the dimensions are automatically
selected.
pdf
boolen value determinining if pdf files or jpeg images will be
produced by the QA process
name
The name of the process used for the headings in the HTML
output.
QA processes of type '2DStatsPlot' detects differences in the value of
a summary statistic such as the mean, median etc across multiple
samples.
For more details on how to layout
qaProcess objects to
HTML, see writeQAReport and
qaReport.