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flowQ (version 1.32.0)

Quality control for flow cytometry

Description

Provides quality control and quality assessment tools for flow cytometry data.

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Version

Version

1.32.0

License

Artistic-2.0

Maintainer

MJiang

Last Published

February 15th, 2017

Functions in flowQ (1.32.0)

qaProcess.timeline

Create QA process of type 'timeline'
qaProcess.ECDFPlot

Creates a QA process for comparisons of ECDF's across multiple samples
qaProcess.timeflow

Create QA process of type 'timeflow'
binaryAggregator-class

Class "binaryAggregator"
outliers-methods

~~ Methods for Function outliers in Package `.GlobalEnv' ~~
writeQAReport

Create HTML report for (lists of) qaProcess objects
qaAggregator-class

Abstraction of the possible outcomes of a QA process
qaProcess.marginevents

Create QA process of type 'marginevents'
qaProcess.BoundaryPlot

Creates a QA process for comparison of the percentage of boundary events for the specified parameters across multiple samples
qaReport

Create HTML report using one or several QA process function(s)
writeQATextReport

Create tab delimited text files for (lists of) qaProcess objects
flowQ-package

Quality control for flow cytometry
qaProcess.cellnumber

Create QA process of type 'cellnumber'
locateDuplicatedParameters

Locate Duplicated Parameters
qData

Data for demonstrating QA processes that compares dye parameters from each patient across multiple aliquots
scatter_gate

Singlets Detection
flowQB-package

Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, B and CV-instrinsic calculations.
find_peak

Peak Detection
evaluateProcess

Evaluate QA processes
factorAggregator-class

Class "factorAggregator"
qaProcess.DensityPlot

Creates a QA process for comparisons of density plots across multiple samples
qaProcess-class

Abstraction of the results of a QA process
BEADflowQBCalculation

QB Calculation for Beads
qaProcess.KLDistPlot

Creates a QA process for comparisons of KL Distances across multiple samples
qaProcess.2DStatsPlot

Creates a QA process for 2D summary statistic comparisons across multiple samples
LEDflowQBCalculation

QB Calculation for LEDs
numericAggregator-class

Class "numericAggregator"
outlier-class

Virtual Class "outlier"
validProcess

Validate a QAProcess object
qaProcessSummary

Class "qaProcessSummary"
preProcessFlowList

Preprocess a list of flowSets to add empty flowFrames for patients in which certain aliquots are missing
outlierResult-class

Class "outlierResult"
aggregatorList-class

Class "aggregatorList"
qaGraphList-class

Class "qaGraphList"
qaGraph-class

Class "qaGraph"
normailzeSets

Locate Duplicated Parameters
qaProcessFrame-class

Class "qaProcessFrame"
discreteAggregator-class

Class "discreteAggregator"
rangeAggregator-class

Class "rangeAggregator"
stringAggregator-class

Class "stringAggregator"
txtFormatQAObject

Formats results contained in QA process objects into a data frame with appropriate row and column names