flowSet
as
input and
creates all necessary output for a 'cellnumber' type QA
process. Objects created by this function can be laid out as HTML
using writeQAReport
.
qaProcess.cellnumber(set, grouping=NULL, outdir, cFactor=2, absolute.value=NULL, two.sided = FALSE, name="cell number", sum.dimensions=NULL, pdf=TRUE, ...)
flowSet
. set
used as a grouping variable. If this
argument is used and if absolute.value
is NULL
, outlier
detection will be performed within groups rather than across all
samples.two.sided=TRUE
or only
towards smaller event numbers if two.sided=FALSE
.NULL
, cFactor
and two.sided
are ignored.FALSE
if disk space is critical, since the pdf versions of
the image consume much more space on the hard drive compared to the
bitmap version.qaProcess
.
absolute.value
is not NULL
, by an absolute cutoff
value. If there is a natural grouping among the samples, this can be
specified using the grouping
argument. In this case, the
outlier detection will be performed within its respective group for a
particular sample.
For more details on how to layout
qaProcess
objects to
HTML, see writeQAReport
and
qaReport
.
writeQAReport
,
qaReport
,
qaProcess
,
qaProcess.marginevents
,
qaProcess.timeflow
,
qaProcess.timeline
## Not run:
# data(GvHD)
# dest <- file.path(tempdir(), "flowQ")
# qp <- qaProcess.cellnumber(GvHD, outdir=dest, cFactor=2)
# qp
# ## End(Not run)
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