flowUtils (version 1.36.0)

flowUtils-package: Utilities for flow cytometry data

Description

This package includes functions to import gates, transformations and compensations defined in compliance with Gating-ML specification version 1.5 and 2.0. This package depends on the flowCore package for methods to evaluate the Gating-ML files read into the workspace.

The main features of this package provide compatability to the data standards defined by the Gating-ML specification version 1.5 and 2.0.

The package also includes a Test Suite, which allows the user to test whether the implmentation of gates an, transformations are in compliance with the Gating-ML standard.

Arguments

References

Spidlen J, ISAC DSTF, Brinkman RR. 2014. Gating-ML 2.0. International Society for Advancement of Cytometry (ISAC) standard for representing gating descriptions in flow cytometry. http://flowcyt.sf.net/gating/20141009.pdf http://flowcyt.sf.net/gating/20141009.full.zip

Spidlen J, Leif RC, Moore W, Roederer M, ISAC DSTF, Brinkman RR. 2008. Gating-ML: XML-based gating descriptions in flow cytometry. Cytometry A. 2008 Dec; 73A(12):1151--7. doi: 10.1002/cyto.a.20637.

Spidlen J, ISAC DSTF, Brinkman RR. 2008. Gating-ML Candidate Recommendation for Gating Description in Flow Cytometry version 1.5. http://flowcyt.sf.net/gating/Gating-ML.v1.5.081030.pdf http://flowcyt.sf.net/gating/Gating-ML.v1.5.081030.full.zip http://flowcyt.sf.net/gating/Gating-ML.v1.5.081030.Compliance-tests.081030.zip

See Also

flowCore